SOUTH PARIS

STRUCTURAL BIOINFORMATIC

South Paris provides access to several web-servers and methodologies dedicated to structural bioinformatics. A vast spectrum of approaches and expertise are proposed including structural prediction, protein docking, computational design and molecular dynamic simulations.

From the sequence of a protein of interest, our tools and expertise can be used to tackle a number of issues :

• Fold Recognition and Remote Homology Detection
• Domain boundaries,                    
• Comparative modelling              
• Protein-Protein Docking and Protein-Peptide
• Computational Design,                               

Methodologies & Developments :

Protein-protein docking methods :

InterEvScore http://biodev.cea.fr/interevol/interevscore/

Andreani J, Faure G, Guerois R. Bioinformatics. 2013

Database of protein complex interfaces

InterEvol http://biodev.cea.fr/interevol/

Faure G, Andreani J, Guerois R. Nucleic Acids Res. 2012

Suboptimal alignments to improve structural models

HHalign-Kbest http://biodev.cea.fr/hhalignkbest

Yu J, Guerois R. submitted

Bibliography

Docking :

Lombardi C et al, PLoS Pathog. 2013

Malivert et al, JBC 2010. Ropars et al, PNAS 2011

Remote homologies :

Lopes A et al, NAR 2010

Le Tallec B et al, Mol Cell. 2009 & 2007